Transcript: lnc-POU5F1B-7:1

Basic information

LNCipedia transcript ID: lnc-POU5F1B-7:1 
LNCipedia gene ID: lnc-POU5F1B-7
Ensembl Gene ID: ENSG00000253427
Ensembl Transcript ID: ENST00000520171
Location (hg38): chr8:126474189-126492596
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520171; ENST00000520171.1; RP11-103H7.1-001; OTTHUMT00000381484.1; NONHSAT128996
Alternative gene names: ENSG00000253427; RP11-103H7.1; ENSG00000253427.1; OTTHUMG00000165031.1; AC084116.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8412 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-POU5F1B-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU5F1B-5:1
3.1 lnc-POU5F1B-7:1
4.0 lnc-POU5F1B-7:1
4.1 lnc-POU5F1B-7:1
5.0 lnc-POU5F1B-7:1
5.1 lnc-NSMCE2-11:1
5.2 lnc-POU5F1B-7:1