Transcript: lnc-PPA2-1:1

Basic information

LNCipedia transcript ID: lnc-PPA2-1:1 
LNCipedia gene ID: lnc-PPA2-1
Location (hg38): chr4:105484648-105486357
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1625 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000501580
Alternative gene names: ENSG00000245205


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0612 non-coding 
CPAT coding probability 69.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPA2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPA2-1:1
3.1 lnc-PPA2-1:1
4.0 lnc-PPA2-1:1
4.1 lnc-PPA2-1:1
5.0 lnc-PPA2-1:1
5.1 lnc-SLC9B2-33:1
5.2 lnc-PPA2-1:1