Transcript: lnc-PPARGC1A-1:1

Basic information

LNCipedia transcript ID: lnc-PPARGC1A-1:1 
LNCipedia gene ID: lnc-PPARGC1A-1
Location (hg38): chr4:23728786-23733936
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008448; NONHSAT095782
Alternative gene names: XLOC_003907; linc-GPR125-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -550.0432 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPARGC1A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPARGC1A-1:1
3.1 lnc-PPARGC1A-1:1
4.0 lnc-PPARGC1A-1:1
4.1 lnc-PPARGC1A-1:1
5.0 lnc-PPARGC1A-1:1
5.1 lnc-AFAP1-115:1
5.2 lnc-PPARGC1A-1:1