Transcript: lnc-PPDPFL-3:1

Basic information

LNCipedia transcript ID: lnc-PPDPFL-3:1 
LNCipedia gene ID: lnc-PPDPFL-3
Ensembl Gene ID: ENSG00000253608
Ensembl Transcript ID: ENST00000522575
RefSeq ID: NR_105002
Location (hg38): chr8:48551567-48698510
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2372 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522575.1; RP11-770E5.1-001; OTTHUMT00000377771.1; NONHSAT126484; NR_105002; NR_105002.1
Alternative gene names: ENSG00000253608.1; RP11-770E5.1; OTTHUMG00000164198.1; AC022915.2; LOC101929268


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.6935 non-coding 
CPAT coding probability 2.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPDPFL-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C8orf22-3:1
4.0 lnc-C8orf22-3:1
4.1 lnc-C8orf22-3:1
5.0 lnc-C8orf22-3:1
5.1 lnc-SDCBP-113:1
5.2 lnc-PPDPFL-3:1