Transcript: lnc-PPIAL4C-4:16

Basic information

LNCipedia transcript ID: lnc-PPIAL4C-4:16 
LNCipedia gene ID: lnc-PPIAL4C-4
Location (hg38): chr1:149607299-149698721
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA62:2
Alternative gene names: KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.4518 non-coding 
CPAT coding probability 12.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4C-4:16 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00869:19
4.1 LINC00869:19
5.0 LINC00869:19
5.1 lnc-FCGR1A-4:7
5.2 lnc-PPIAL4C-4:16