Transcript: lnc-PPIAL4C-4:21

Basic information

LNCipedia transcript ID: lnc-PPIAL4C-4:21 
LNCipedia gene ID: lnc-PPIAL4C-4
Ensembl Gene ID: ENSG00000275557
Ensembl Transcript ID: ENST00000617712
Location (hg38): chr1:149607765-149612402
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617712.1
Alternative gene names: ENSG00000275557.1; RP11-353N4.6; AC242842.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -75.6263 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4C-4:21 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-FCGR1A-4:12
5.1 lnc-FCGR1A-4:12
5.2 lnc-PPIAL4C-4:21