Transcript: lnc-PPIAL4C-4:27

Basic information

LNCipedia transcript ID: lnc-PPIAL4C-4:27 
LNCipedia gene ID: lnc-PPIAL4C-4
Location (hg38): chr1:149660854-149669310
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 654 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000411795.2
Alternative gene names: ENSG00000235398.4; LINC00623;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 105.3641 coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPIAL4C-4:27 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4B-1:28
4.0 LINC00623:36
4.1 LINC00623:36
5.0 LINC00623:36
5.1 lnc-FCGR1A-4:18
5.2 lnc-PPIAL4C-4:27