Transcript: lnc-PPIAL4F-1:2

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-1:2 
LNCipedia gene ID: lnc-PPIAL4F-1
Location (hg38): chr1:144917170-144919902
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2175 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000441760; ENST00000441760.1; RP11-289H16.1-001; OTTHUMT00000099257.1; NONHSAT005768
Alternative gene names: ENSG00000224363; RP11-289H16.1; ENSG00000224363.1; OTTHUMG00000041441.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.6214 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM72D-1:1
3.1 lnc-FAM72D-1:1
4.0 lnc-FAM72D-1:1
4.1 lnc-FAM72D-1:1
5.0 lnc-FAM72D-1:1
5.1 lnc-FCGR1A-65:2
5.2 lnc-PPIAL4F-1:2