Transcript: lnc-PPIAL4F-3:11

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-3:11 
LNCipedia gene ID: lnc-PPIAL4F-3
Location (hg38): chr1:143736066-143737903
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1072 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00000055
Alternative gene names: XLOC_000393; linc-PPIAL4A-4; KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0073 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-3:11 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4C-2:2
3.1 lnc-PPIAL4C-5:3
4.0 lnc-PPIAL4C-5:3
4.1 LINC00869:62
5.0 LINC00869:62
5.1 lnc-FCGR1A-73:11
5.2 lnc-PPIAL4F-3:11