Transcript: lnc-PPIAL4F-3:12

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-3:12 
LNCipedia gene ID: lnc-PPIAL4F-3
Location (hg38): chr1:143736066-143737904
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1073 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000443018; ENST00000443018.1; RP11-403I13.5-001; OTTHUMT00000099556.1; NONHSAT006174
Alternative gene names: ENSG00000232721; RP11-403I13.5; ENSG00000232721.1; OTTHUMG00000041573.1; KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0073 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-3:12 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4C-2:3
3.1 lnc-PPIAL4C-5:2
4.0 lnc-PPIAL4C-5:2
4.1 LINC00869:63
5.0 LINC00869:63
5.1 lnc-FCGR1A-73:12
5.2 lnc-PPIAL4F-3:12