Transcript: lnc-PPIAL4F-3:13

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-3:13 
LNCipedia gene ID: lnc-PPIAL4F-3
Ensembl Gene ID: ENSG00000232721
Ensembl Transcript ID: ENST00000443018
Location (hg38): chr1:143736066-143739506
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2675 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443018.2
Alternative gene names: ENSG00000232721.2; RP11-403I13.5; KIAA0493; AC239800.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.6825 non-coding 
CPAT coding probability 6.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-3:13 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PPIAL4C-5:6
4.1 LINC00869:64
5.0 LINC00869:64
5.1 lnc-FCGR1A-73:13
5.2 lnc-PPIAL4F-3:13