Transcript: lnc-PPIAL4F-3:2

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-3:2 
LNCipedia gene ID: lnc-PPIAL4F-3
Location (hg38): chr1:143729963-143731214
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1252 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232721.1|FTMT20400006410.1
Alternative gene names: KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.1113 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-3:2 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00869:52
5.0 LINC00869:52
5.1 lnc-FCGR1A-73:2
5.2 lnc-PPIAL4F-3:2