Transcript: lnc-PPIAL4F-3:5

Basic information

LNCipedia transcript ID: lnc-PPIAL4F-3:5 
LNCipedia gene ID: lnc-PPIAL4F-3
Location (hg38): chr1:143735888-143737933
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1613 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT006172; FPKM1_group_1456_transcript_1
Alternative gene names: KIAA0493


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.1983 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIAL4F-3:5 no no no no

Available literature

  1. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4C-5:5
4.0 lnc-PPIAL4C-5:5
4.1 LINC00869:55
5.0 LINC00869:55
5.1 lnc-FCGR1A-73:5
5.2 lnc-PPIAL4F-3:5