Transcript: lnc-PPIE-3:2

Basic information

LNCipedia transcript ID: lnc-PPIE-3:2 
LNCipedia gene ID: lnc-PPIE-3
Location (hg38): chr1:39825266-39838012
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 661 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001992; NONHSAT002606
Alternative gene names: XLOC_000155; linc-MFSD2A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.5164 non-coding 
CPAT coding probability 7.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPIE-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIE-1:2
3.1 lnc-PPIE-3:2
4.0 lnc-PPIE-3:2
4.1 lnc-PPIE-3:2
5.0 lnc-PPIE-3:2
5.1 lnc-PPIE-3:2
5.2 lnc-PPIE-3:2