Transcript: lnc-PPM1D-1:10

Basic information

LNCipedia transcript ID: lnc-PPM1D-1:10 
LNCipedia gene ID: lnc-PPM1D-1
Location (hg38): chr17:60526310-60550798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 542 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259349.1|ENST00000558027.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -37.0987 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPM1D-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPM1D-1:10
5.0 lnc-PPM1D-1:10
5.1 lnc-VMP1-19:9
5.2 lnc-PPM1D-1:10