Transcript: lnc-PPM1D-1:5

Basic information

LNCipedia transcript ID: lnc-PPM1D-1:5 
LNCipedia gene ID: lnc-PPM1D-1
Location (hg38): chr17:60526310-60527411
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1102 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259349.1|MICT00000151718.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -184.6048 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPM1D-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPM1D-1:5
5.0 lnc-PPM1D-1:5
5.1 lnc-VMP1-19:4
5.2 lnc-PPM1D-1:5