Transcript: lnc-PPM1D-1:8

Basic information

LNCipedia transcript ID: lnc-PPM1D-1:8 
LNCipedia gene ID: lnc-PPM1D-1
Location (hg38): chr17:60526310-60550738
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3109 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259349.1|ENCT00000177170.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.6515 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPM1D-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPM1D-1:8
5.0 lnc-PPM1D-1:8
5.1 lnc-VMP1-19:7
5.2 lnc-PPM1D-1:8