Transcript: lnc-PPME1-1:2

Basic information

LNCipedia transcript ID: lnc-PPME1-1:2 
LNCipedia gene ID: lnc-PPME1-1
Location (hg38): chr11:74324115-74324740
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 496 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00019389
Alternative gene names: XLOC_009215; linc-POLD3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.1046 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPME1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPME1-1:2
3.1 lnc-PPME1-1:2
4.0 lnc-PPME1-1:2
4.1 lnc-PPME1-1:2
5.0 lnc-PPME1-1:2
5.1 lnc-TCIRG1-163:2
5.2 lnc-PPME1-1:2