Transcript: lnc-PPP1R12B-3:1

Basic information

LNCipedia transcript ID: lnc-PPP1R12B-3:1 
LNCipedia gene ID: lnc-PPP1R12B-3
Ensembl Gene ID: ENSG00000225620
Ensembl Transcript ID: ENST00000411431
Location (hg38): chr1:202632428-202632911
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 365 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411431; ENST00000411431.1; RP11-569A11.2-001; OTTHUMT00000099177.1; NONHSAT008841
Alternative gene names: ENSG00000225620; RP11-569A11.2; ENSG00000225620.1; OTTHUMG00000041395.1; AC104463.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R12B-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP1R12B-2:1
3.1 lnc-PPP1R12B-3:1
4.0 lnc-PPP1R12B-3:1
4.1 lnc-PPP1R12B-3:1
5.0 lnc-PPP1R12B-3:1
5.1 lnc-ADORA1-14:1
5.2 lnc-PPP1R12B-3:1