Transcript: lnc-PPP1R3B-11:3

Basic information

LNCipedia transcript ID: lnc-PPP1R3B-11:3 
LNCipedia gene ID: lnc-PPP1R3B-11
Ensembl Gene ID: ENSG00000272267
Ensembl Transcript ID: ENST00000607598
Location (hg38): chr8:9555144-9556520
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1377 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607598.2
Alternative gene names: ENSG00000272267.2; RP11-375N15.2; AC021242.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -119.9188 non-coding 
CPAT coding probability 0.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R3B-11:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PPP1R3B-11:3
4.1 lnc-PPP1R3B-11:3
5.0 lnc-PPP1R3B-11:3
5.1 lnc-PINX1-37:4
5.2 lnc-PPP1R3B-11:3