Transcript: lnc-PPP1R9B-3:1

Basic information

LNCipedia transcript ID: lnc-PPP1R9B-3:1 
LNCipedia gene ID: lnc-PPP1R9B-3
Ensembl Gene ID: ENSG00000253730
Ensembl Transcript ID: ENST00000523083
Location (hg38): chr17:50158333-50161276
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523083.1; RP11-893F2.13-001; OTTHUMT00000376608.1; NONHSAT054595
Alternative gene names: ENSG00000253730.1; RP11-893F2.13; OTTHUMG00000163971.1; AC015909.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.7313 non-coding 
CPAT coding probability 7.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP1R9B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL1A1-3:1
4.0 lnc-COL1A1-3:1
4.1 lnc-COL1A1-3:1
5.0 lnc-COL1A1-3:1
5.1 lnc-LRRC59-9:1
5.2 lnc-PPP1R9B-3:1