Transcript: lnc-PPP2R1A-1:1

Basic information

LNCipedia transcript ID: lnc-PPP2R1A-1:1 
LNCipedia gene ID: lnc-PPP2R1A-1
Ensembl Gene ID: ENSG00000267927
Ensembl Transcript ID: ENST00000599775
Location (hg38): chr19:52171158-52177002
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 578 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067522; ENST00000599775.1
Alternative gene names: ENSG00000267927.1; CTD-2525I3.2; AC010320.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9411 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP2R1A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP2R1A-1:1
4.0 lnc-PPP2R1A-1:1
4.1 lnc-PPP2R1A-1:1
5.0 lnc-PPP2R1A-1:1
5.1 lnc-ACP4-56:1
5.2 lnc-PPP2R1A-1:1