Transcript: lnc-PPP2R1A-3:1

Basic information

LNCipedia transcript ID: lnc-PPP2R1A-3:1 
LNCipedia gene ID: lnc-PPP2R1A-3
Ensembl Gene ID: ENSG00000268458
Ensembl Transcript ID: ENST00000597886
Location (hg38): chr19:52142626-52144156
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067519; ENST00000597886.1
Alternative gene names: ENSG00000268458.1; CTC-471J1.9; AC011468.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.8216 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP2R1A-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP2R1A-3:1
4.0 lnc-PPP2R1A-3:1
4.1 lnc-PPP2R1A-3:1
5.0 lnc-PPP2R1A-3:1
5.1 lnc-ACP4-55:1
5.2 lnc-PPP2R1A-3:1