Transcript: lnc-PPP4R1-11:1

Basic information

LNCipedia transcript ID: lnc-PPP4R1-11:1 
LNCipedia gene ID: lnc-PPP4R1-11
Ensembl Gene ID: ENSG00000266149
Ensembl Transcript ID: ENST00000580491
RefSeq ID: NR_024419
Location (hg38): chr18:8360820-8367034
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 616 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000580491.1; RP11-789C17.3-001; OTTHUMT00000444012.1; NONHSAT057168; NR_024419; NR_024419.1
Alternative gene names: ENSG00000266149.1; RP11-789C17.3; OTTHUMG00000178930.1; AP001094.3; LOC100192426


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.4953 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R1-11:1
4.0 lnc-PPP4R1-11:1
4.1 lnc-PPP4R1-11:1
5.0 lnc-PPP4R1-11:1
5.1 lnc-SMAD2-319:1
5.2 lnc-PPP4R1-11:1