Transcript: lnc-PPP4R1-12:2

Basic information

LNCipedia transcript ID: lnc-PPP4R1-12:2 
LNCipedia gene ID: lnc-PPP4R1-12
Location (hg38): chr18:9473185-9475217
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2033 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000273335.1|FTMT27000000736.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -123.7705 non-coding 
CPAT coding probability 6.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-12:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPP4R1-12:2
5.0 lnc-PPP4R1-12:2
5.1 lnc-SMAD2-309:1
5.2 lnc-PPP4R1-12:2