Transcript: lnc-PPP4R1-18:2

Basic information

LNCipedia transcript ID: lnc-PPP4R1-18:2 
LNCipedia gene ID: lnc-PPP4R1-18
Ensembl Gene ID: ENSG00000272799
Ensembl Transcript ID: ENST00000609787
Location (hg38): chr18:9912316-9912849
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609787.1
Alternative gene names: ENSG00000272799.1; RP11-474N24.6; AC006238.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.5341 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-18:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R1-18:2
4.0 lnc-PPP4R1-18:2
4.1 lnc-PPP4R1-18:2
5.0 lnc-PPP4R1-18:2
5.1 lnc-SMAD2-301:4
5.2 lnc-PPP4R1-18:2