Transcript: lnc-PPP4R1-18:3

Basic information

LNCipedia transcript ID: lnc-PPP4R1-18:3 
LNCipedia gene ID: lnc-PPP4R1-18
Location (hg38): chr18:9912317-9915203
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2887 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272799.1|ENCT00000195557.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5341 non-coding 
CPAT coding probability 13.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-18:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PPP4R1-18:3
5.0 lnc-PPP4R1-18:3
5.1 lnc-SMAD2-301:1
5.2 lnc-PPP4R1-18:3