Transcript: lnc-PPP4R1-2:6

Basic information

LNCipedia transcript ID: lnc-PPP4R1-2:6 
LNCipedia gene ID: lnc-PPP4R1-2
Location (hg38): chr18:9290917-9322083
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 272 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026407; NONHSAT057215
Alternative gene names: XLOC_012754; linc-LAMA1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP4R1-2:5
3.1 lnc-PPP4R1-2:6
4.0 lnc-PPP4R1-2:6
4.1 lnc-PPP4R1-2:6
5.0 lnc-PPP4R1-2:6
5.1 lnc-SMAD2-311:12
5.2 lnc-PPP4R1-2:6