Transcript: lnc-PPP4R2-9:1

Basic information

LNCipedia transcript ID: lnc-PPP4R2-9:1 
LNCipedia gene ID: lnc-PPP4R2-9
RefSeq ID: NR_121660
Location (hg38): chr3:73521322-73569774
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 902 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121660; NR_121660.1
Alternative gene names: LOC101927296


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.3168 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R2-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4R2-9:1
4.0 lnc-PPP4R2-9:1
4.1 lnc-PPP4R2-9:1
5.0 lnc-PPP4R2-9:1
5.1 lnc-FRG2C-18:1
5.2 lnc-PPP4R2-9:1