Transcript: lnc-PPP4R3C-2:12

Basic information

LNCipedia transcript ID: lnc-PPP4R3C-2:12 
LNCipedia gene ID: lnc-PPP4R3C-2
Location (hg38): chrX:27158905-27176298
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000436019; ENST00000436019.1; RP11-268G12.3-001; OTTHUMT00000056135.1; NONHSAT136542
Alternative gene names: ENSG00000242021; RP11-268G12.3; ENSG00000242021.1; OTTHUMG00000021297.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.0833 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4R3C-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCAF8L1-2:1
3.1 lnc-DCAF8L1-2:2
4.0 lnc-DCAF8L1-2:2
4.1 lnc-DCAF8L1-2:2
5.0 lnc-DCAF8L1-2:2
5.1 lnc-PCSK1N-120:12
5.2 lnc-PPP4R3C-2:12