Transcript: lnc-PPP5D1-1:2

Basic information

LNCipedia transcript ID: lnc-PPP5D1-1:2 
LNCipedia gene ID: lnc-PPP5D1-1
Ensembl Gene ID: ENSG00000269292
Ensembl Transcript ID: ENST00000597609
Location (hg38): chr19:46609277-46610779
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 296 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT066902; ENST00000597609.1
Alternative gene names: ENSG00000269292.1; CTB-12A17.3; AC093503.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -350.9478 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP5D1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC011551.1-1:2
4.0 lnc-AC011551.1-1:2
4.1 lnc-AC011551.1-1:2
5.0 lnc-AC011551.1-1:2
5.1 lnc-TMEM160-25:2
5.2 lnc-PPP5D1-1:2