Transcript: lnc-PPP6R1-1:3

Basic information

LNCipedia transcript ID: lnc-PPP6R1-1:3 
LNCipedia gene ID: lnc-PPP6R1-1
Ensembl Gene ID: ENSG00000276570
Ensembl Transcript ID: ENST00000586923
Location (hg38): chr19:55227219-55230279
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3061 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068007; ENST00000586923.1
Alternative gene names: ENSG00000276570.1; CTD-2587H24.14; AC010327.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 86.7473 coding 
CPAT coding probability 98.13% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PPP6R1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM86B-1:2
4.0 lnc-PPP6R1-1:3
4.1 lnc-PPP6R1-1:3
5.0 lnc-PPP6R1-1:3
5.1 lnc-SYT5-6:2
5.2 lnc-PPP6R1-1:3