Transcript: lnc-PQLC1-104:5

Basic information

LNCipedia transcript ID: lnc-PQLC1-104:5 
LNCipedia gene ID: lnc-PQLC1-104
Ensembl Gene ID: ENSG00000178412
Ensembl Transcript ID: ENST00000317008
RefSeq ID: NR_136643
Location (hg38): chr18:79638928-79679745
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1111 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060050; ENST00000317008.4; NR_136643.1
Alternative gene names: ENSG00000178412.4; RP11-567M16.3; AC068473.1; LOC284241


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.4819 non-coding 
CPAT coding probability 74.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PQLC1-104:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC068473.1-6:1
4.0 lnc-AC068473.1-6:1
4.1 lnc-AC068473.1-1:6
5.0 lnc-AC068473.1-1:6
5.1 lnc-PQLC1-4:5
5.2 lnc-PQLC1-104:5