Transcript: lnc-PQLC1-16:3

Basic information

LNCipedia transcript ID: lnc-PQLC1-16:3 
LNCipedia gene ID: lnc-PQLC1-16
Location (hg38): chr18:79397212-79400230
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1332 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000038118.1|MICT00000164786.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -24.5103 non-coding 
CPAT coding probability 13.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PQLC1-16:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC068473.1-16:1
5.0 lnc-AC068473.1-16:1
5.1 lnc-PQLC1-16:1
5.2 lnc-PQLC1-16:3