Transcript: lnc-PQLC1-5:3

Basic information

LNCipedia transcript ID: lnc-PQLC1-5:3 
LNCipedia gene ID: lnc-PQLC1-5
Location (hg38): chr18:78795629-78796807
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026583
Alternative gene names: XLOC_012899; linc-MBP-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.2224 non-coding 
CPAT coding probability 4.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PQLC1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC068473.1-3:1
3.1 lnc-AC068473.1-5:1
4.0 lnc-AC068473.1-5:1
4.1 lnc-AC068473.1-5:1
5.0 lnc-AC068473.1-5:1
5.1 lnc-PQLC1-6:2
5.2 lnc-PQLC1-5:3