Transcript: lnc-PRAC2-3:3

Basic information

LNCipedia transcript ID: lnc-PRAC2-3:3 
LNCipedia gene ID: lnc-PRAC2-3
Ensembl Gene ID: ENSG00000264451
Ensembl Transcript ID: ENST00000579972
Location (hg38): chr17:48460370-48466040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 701 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579972.1; RP11-433M22.2-001; OTTHUMT00000443444.1; NONHSAT054398
Alternative gene names: ENSG00000264451.1; RP11-433M22.2; OTTHUMG00000178827.1; AC036222.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.1309 non-coding 
CPAT coding probability 8.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAC2-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNX11-3:1
4.0 lnc-SNX11-3:1
4.1 lnc-SNX11-3:1
5.0 lnc-SNX11-3:1
5.1 lnc-ACSF2-60:3
5.2 lnc-PRAC2-3:3