Transcript: lnc-PRAG1-12:1

Basic information

LNCipedia transcript ID: lnc-PRAG1-12:1 
LNCipedia gene ID: lnc-PRAG1-12
Ensembl Gene ID: ENSG00000268955
Ensembl Transcript ID: ENST00000594215
Location (hg38): chr8:8188535-8189195
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 661 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000594215.2
Alternative gene names: ENSG00000268955.2; RP11-556O5.6; AC068020.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.2095 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAG1-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PRAGMIN.1-12:1
4.1 lnc-PRAGMIN.1-12:1
5.0 lnc-PRAGMIN.1-12:1
5.1 lnc-DEFA1B-38:1
5.2 lnc-PRAG1-12:1