Transcript: lnc-PRAG1-1:1

Basic information

LNCipedia transcript ID: lnc-PRAG1-1:1 
LNCipedia gene ID: lnc-PRAG1-1
Ensembl Gene ID: ENSG00000253505
Ensembl Transcript ID: ENST00000519814
Location (hg38): chr8:8422424-8424632
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 735 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519814; ENST00000519814.1; CTA-398F10.1-002; OTTHUMT00000375021.1; NONHSAT124873
Alternative gene names: ENSG00000253505; CTA-398F10.1; ENSG00000253505.1; OTTHUMG00000163730.1; AC103957.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0023 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAG1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRAGMIN.1-1:1
3.1 lnc-PRAGMIN.1-1:1
4.0 lnc-PRAGMIN.1-1:1
4.1 lnc-PRAGMIN.1-1:1
5.0 lnc-PRAGMIN.1-1:1
5.1 lnc-DEFA1B-44:1
5.2 lnc-PRAG1-1:1