Transcript: lnc-PRAMEF15-1:4

Basic information

LNCipedia transcript ID: lnc-PRAMEF15-1:4 
LNCipedia gene ID: lnc-PRAMEF15-1
Location (hg38): chr1:13324039-13324512
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 378 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432559.1; RP11-219C24.10-001; OTTHUMT00000022044.1
Alternative gene names: ENSG00000228229.1; RP11-219C24.10; OTTHUMG00000008038.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.0743 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAMEF15-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRAMEF9-1:1
4.0 lnc-PRAMEF9-1:1
4.1 lnc-PRAMEF9-1:1
5.0 lnc-PRAMEF9-1:1
5.1 lnc-PRAMEF15-1:2
5.2 lnc-PRAMEF15-1:4