Transcript: lnc-PRAMEF15-1:5

Basic information

LNCipedia transcript ID: lnc-PRAMEF15-1:5 
LNCipedia gene ID: lnc-PRAMEF15-1
Location (hg38): chr1:13324039-13324518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 384 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT000973; ENST00000432559.2
Alternative gene names: ENSG00000228229.2; RP11-219C24.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.0743 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRAMEF15-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRAMEF9-1:2
4.0 lnc-PRAMEF9-1:2
4.1 lnc-PRAMEF9-1:2
5.0 lnc-PRAMEF9-1:2
5.1 lnc-PRAMEF15-1:3
5.2 lnc-PRAMEF15-1:5