Transcript: lnc-PRB1-1:2

Basic information

LNCipedia transcript ID: lnc-PRB1-1:2 
LNCipedia gene ID: lnc-PRB1-1
Ensembl Gene ID: ENSG00000255790
Ensembl Transcript ID: ENST00000538349
Location (hg38): chr12:11399381-11486678
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538349.1; RP11-711K1.7-001; OTTHUMT00000402313.2; NONHSAT026937; ENST00000538349.5
Alternative gene names: ENSG00000255790.1; RP11-711K1.7; OTTHUMG00000169117.2; ENSG00000255790.5; AC078950.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.2592 non-coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRB1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRB1-1:2
4.0 lnc-PRB1-1:2
4.1 lnc-PRB1-1:2
5.0 lnc-PRB1-1:2
5.1 lnc-M6PR-50:2
5.2 lnc-PRB1-1:2