Transcript: lnc-PRDM1-5:1

Basic information

LNCipedia transcript ID: lnc-PRDM1-5:1 
LNCipedia gene ID: lnc-PRDM1-5
Location (hg38): chr6:105900282-105900913
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000085214.1|FTMT22400008039.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -141.3287 non-coding 
CPAT coding probability 4.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PRDM1-5:1
5.0 lnc-PRDM1-5:1
5.1 lnc-SMPD2-59:1
5.2 lnc-PRDM1-5:1