Transcript: lnc-PRDM11-3:2

Basic information

LNCipedia transcript ID: lnc-PRDM11-3:2 
LNCipedia gene ID: lnc-PRDM11-3
Location (hg38): chr11:45355492-45356614
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 330 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00019292
Alternative gene names: XLOC_009120; linc-SLC35C1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.6165 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM11-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM11-2:2
3.1 lnc-PRDM11-3:2
4.0 lnc-PRDM11-3:2
4.1 lnc-PRDM11-3:2
5.0 lnc-PRDM11-3:2
5.1 lnc-OR5L2-91:11
5.2 lnc-PRDM11-3:2