Transcript: lnc-PRDM11-3:4

Basic information

LNCipedia transcript ID: lnc-PRDM11-3:4 
LNCipedia gene ID: lnc-PRDM11-3
Ensembl Gene ID: ENSG00000254427
Ensembl Transcript ID: ENST00000524565
Location (hg38): chr11:45355501-45356648
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 872 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524565; ENST00000524565.1; RP11-430H10.1-003; OTTHUMT00000390117.1; NONHSAT019021
Alternative gene names: ENSG00000254427; RP11-430H10.1; ENSG00000254427.1; OTTHUMG00000166506.1; AC103736.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.6165 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM11-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM11-2:4
3.1 lnc-PRDM11-3:4
4.0 lnc-PRDM11-3:4
4.1 lnc-PRDM11-3:4
5.0 lnc-PRDM11-3:4
5.1 lnc-OR5L2-91:13
5.2 lnc-PRDM11-3:4