Transcript: lnc-PRDM11-3:6

Basic information

LNCipedia transcript ID: lnc-PRDM11-3:6 
LNCipedia gene ID: lnc-PRDM11-3
Location (hg38): chr11:45355806-45356644
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 369 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019893; NONHSAT019023
Alternative gene names: XLOC_009120; linc-SLC35C1-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -223.6165 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM11-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM11-2:6
3.1 lnc-PRDM11-3:6
4.0 lnc-PRDM11-3:6
4.1 lnc-PRDM11-3:6
5.0 lnc-PRDM11-3:6
5.1 lnc-OR5L2-91:15
5.2 lnc-PRDM11-3:6