Transcript: lnc-PRDM11-4:1

Basic information

LNCipedia transcript ID: lnc-PRDM11-4:1 
LNCipedia gene ID: lnc-PRDM11-4
Ensembl Gene ID: ENSG00000255267
Ensembl Transcript ID: ENST00000528390
RefSeq ID: NR_122071
Location (hg38): chr11:45371397-45388508
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2597 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00019091; ENST00000528390; ENST00000528390.1; RP11-430H10.2-001; OTTHUMT00000390118.1; NONHSAT019024; NR_122071; NR_122071.1
Alternative gene names: XLOC_009121; linc-SLC35C1-4; ENSG00000255267; RP11-430H10.2; ENSG00000255267.1; OTTHUMG00000166507.1; ENSG00000255267.2; ENSG00000255267.3; AC018716.2; LOC399886


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.7185 non-coding 
CPAT coding probability 47.77% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRDM11-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM11-3:1
3.1 lnc-PRDM11-4:1
4.0 lnc-PRDM11-4:1
4.1 lnc-PRDM11-4:1
5.0 lnc-PRDM11-4:1
5.1 lnc-OR5L2-90:1
5.2 lnc-PRDM11-4:1