Transcript: lnc-PRDM11-5:1

Basic information

LNCipedia transcript ID: lnc-PRDM11-5:1 
LNCipedia gene ID: lnc-PRDM11-5
Ensembl Gene ID: ENSG00000254651
Ensembl Transcript ID: ENST00000534604
Location (hg38): chr11:45399448-45400528
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534604; ENST00000534604.1; RP11-430H10.3-001; OTTHUMT00000390120.1; NONHSAT019027
Alternative gene names: ENSG00000254651; RP11-430H10.3; ENSG00000254651.1; OTTHUMG00000166509.1; AC018716.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3902 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM11-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM11-4:1
3.1 lnc-PRDM11-5:1
4.0 lnc-PRDM11-5:1
4.1 lnc-PRDM11-5:1
5.0 lnc-PRDM11-5:1
5.1 lnc-OR5L2-89:1
5.2 lnc-PRDM11-5:1