Transcript: lnc-PRDM13-4:1

Basic information

LNCipedia transcript ID: lnc-PRDM13-4:1 
LNCipedia gene ID: lnc-PRDM13-4
Ensembl Gene ID: ENSG00000228082
Ensembl Transcript ID: ENST00000411442
Location (hg38): chr6:100427118-100437484
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 380 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411442.1; RP1-121G13.2-001; OTTHUMT00000041629.1; NONHSAT114155
Alternative gene names: ENSG00000228082.1; RP1-121G13.2; OTTHUMG00000015276.1; Z86062.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.6513 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM13-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRDM13-4:1
4.0 lnc-PRDM13-4:1
4.1 lnc-PRDM13-4:1
5.0 lnc-PRDM13-4:1
5.1 lnc-SMPD2-84:2
5.2 lnc-PRDM13-4:1