Transcript: lnc-PRDM2-7:1

Basic information

LNCipedia transcript ID: lnc-PRDM2-7:1 
LNCipedia gene ID: lnc-PRDM2-7
Location (hg38): chr1:14195193-14198320
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2948 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT000991; FPKM1_group_146_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.343 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM2-7:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf196-2:1
4.0 lnc-C1orf196-2:1
4.1 lnc-C1orf196-2:1
5.0 lnc-C1orf196-2:1
5.1 lnc-PRDM2-3:1
5.2 lnc-PRDM2-7:1