Transcript: lnc-PRDM8-3:1

Basic information

LNCipedia transcript ID: lnc-PRDM8-3:1 
LNCipedia gene ID: lnc-PRDM8-3
Ensembl Gene ID: ENSG00000251399
Ensembl Transcript ID: ENST00000513155
Location (hg38): chr4:79596542-79597173
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 355 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513155; ENST00000513155.1; RP11-234K19.1-001; OTTHUMT00000362717.1; NONHSAT097118; FPKM1_group_23578_transcript_1
Alternative gene names: ENSG00000251399; RP11-234K19.1; ENSG00000251399.1; OTTHUMG00000160859.1; AC092542.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.4816 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM8-2:1
3.1 lnc-PRDM8-3:1
4.0 lnc-PRDM8-3:1
4.1 lnc-PRDM8-3:1
5.0 lnc-PRDM8-3:1
5.1 lnc-PRDM8-3:1
5.2 lnc-PRDM8-3:1